The project provides scripts for the simulation, modeling, and analysis of RRBS methylation profiles. Users may generate biologically realistic RRBS datasets and apply a genome-wide algorithm for the detection of differentially methylated regions.
R scripts for RRBS simulation and modeling can be downloaded as follows:
svn checkout svn://r-forge.r-project.org/svnroot/rrbs-sim/RScripts/
July 2014: Scripts have been updated to be compatible with R version 3.1.1
The project summary page you can find here.